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Life Sciences AI·Pre-Seed·San Francisco, CA

Chief Platform Engineer

at CortexLife Sciences AI
Location
San Francisco, CA
Salary
$150,000 - $300,000
Type
Full-Time
Calibration
Candidate rejected3d ago

Clearly a strong senior AI/platform architect with excellent autonomous ownership, security/compliance expertise, and hands-on agentic AI work. The gap is that this role specifically requires deep ontology/knowledge-model and graph database experience. While knowledge graphs are mentioned, there is…

Candidate rejected19d ago

Outstanding infra and distributed systems engineer, but the experience aligns much more with platform engineering at large-scale infrastructure companies than with the semantic data platform focus we have.

About Cortex
Cortex is building a neurosymbolic platform for scientific research, and its edge is context almost no one else has: through university contracts it can access entire labs' unpublished, siloed data — the failed experiments and archival files that never make it into a paper or a queryable database. The company is already piloting with top Stanford labs, including geneticist Michael Snyder's, is in talks with a Nobel laureate's lab at Caltech, and has two commercial customers in materials science and therapeutics. Founded by two Yale alumni — CEO Leïa Ryan and CTO Riya Bhargava, who leads the deep ML work — Cortex raised its pre-seed in April 2026 and is preparing its next raise in August. The platform turns that siloed lab data into structured, queryable context that scientific reasoning models can actually use. At its center is Guild, the data layer: a knowledge graph and ontology (TypeDB) plus a vector store (Qdrant) that model scientific work, ingestion pipelines that populate it, and reasoning agents that query the graph to accelerate discovery — so PhD researchers spend less of their time on data grunt work and more on the science. The company's motto is "making science happen at the speed of imagination." The team works in person in San Francisco.
Pre-Seed • 1 - 10
Stage & size
Life Sciences AI
Industry
2026
Founded
About This Role

Cortex is hiring a Chief Platform Engineer to own Guild — the entire data layer beneath its reasoning platform. This is a C-suite seat reporting to the CTO. You'd inherit and evolve the ontology, knowledge graph, and pipelines, set technical direction for the platform layer, and eventually hire and lead the platform team. On a three-person team raising again in August, the founders describe themselves as spread too thin — this hire takes the whole platform off the CTO's plate.

You'll design and maintain the ontology in TypeDB (TypeQL) — the entity types, relations, and rules that model experiments, assays, materials, and evidence — and own the knowledge graph and Qdrant vector store in production, including the hybrid symbolic-and-semantic retrieval the reasoning agents depend on. Agents query the graph but never mutate it; you define and enforce the audited write path. You'll build ingestion and entity-resolution pipelines that normalize messy, heterogeneous inputs (instruments, ELN/LIMS, publications, assay results) with provenance captured at write time, own platform security end to end, and lead SOC 2 — prepping for the GxP and 21 CFR Part 11 requirements that pharma partners bring.

What You'll Own

  • The ontology in TypeDB/TypeQL — entity types, relations, and rules for experiments, assays, materials, evidence
  • Knowledge graph + Qdrant vector store in production: schema evolution, query performance, hybrid symbolic + semantic retrieval
  • Ingestion + entity-resolution pipelines normalizing heterogeneous inputs, with provenance at write time
  • The controlled, audited write path to the symbolic layer — agents read, never mutate
  • Platform security: authN/authZ (RBAC/ABAC), tenant isolation, secrets management, encryption in transit and at rest, audit logging
  • SOC 2 certification; readiness for GxP / 21 CFR Part 11 data-integrity and audit-trail requirements
  • SLOs and observability across the platform's FastAPI services
  • Engineering standards, and hiring the platform team
  • Ramp: onboard on internal docs in week 1 and get fluent fast on the data-interaction and multi-agent-harness sides; by end of month 1, take over development and evolution of the platform from the CTO

Requirements

  • Designed and operated production ontologies or knowledge models — Palantir Foundry/Gotham, or a comparable semantic-layer, master-data, or knowledge-graph system
  • Strong command of graph databases (TypeDB/TypeQL, Neo4j, or RDF/SPARQL) and data modeling
  • Production Python backend; FastAPI or equivalent
  • Data-integration pipelines built against messy, heterogeneous sources
  • Applied security: authorization models, multi-tenant isolation, secrets, encryption, threat modeling — ideally on sensitive or regulated data
  • Genuinely strong across both front end and back end

Execution and Ownership

  • Sets architecture and operates autonomously at an early-stage company — this is the platform owner
  • Obsession with product and real leadership instinct (they'll build and lead the team)
  • Independent thinker who reasons from first principles, not just wiring together AI-assisted boilerplate

Background

  • Deliberately wide band: either ~1–2 years out and hungry enough to grind and be molded, or a Palantir-level operator worth top dollar. CS plus formal education reads as a strong signal; where you last worked matters more than which school
  • End-to-end personal projects, original CS research, or open-source work weighted heavily

Location and Visa

  • In person in San Francisco
  • Sponsorship open — the team has H-1B/L-1 counsel on call and believes the best talent is international

Nice-to-Have

  • Vector search / retrieval (Qdrant or equivalent)
  • Life sciences, biotech, or scientific-computing background
  • Direct experience taking a system through SOC 2 or HIPAA
  • Agent orchestration or probabilistic programming (DSPy, Pyro)
  • Philosophy or formal-logic bent — the founders think in first- and second-order logic and are building a "reading room filled with philosophy"
  • Hackathon wins, coding-comp medals, or athletics — reads as dynamic, not required
Job Details
Experience
1-8 years
Salary
$150,000 - $300,000
Equity
Yes
Visa Sponsorship
Yes
Employment Type
Full-Time
Benefits & Perks
Health Insurance
Gym Stipend
Doordash For Late-night Work
Green Flags
Palantir (Foundry/Gotham) or comparable knowledge-graph / semantic-layer background
SOC 2 or HIPAA experience on regulated or sensitive data
Qdrant or other vector-search/retrieval in production
Red Flags
Can operate a pre-built platform but has never designed an ontology or knowledge graph from scratch
Back-end-only or front-end-only — can't credibly claim both
No applied security experience; treats SOC 2 / auth as someone else's job

Required Candidate Q&A

Question 1
This role is in person in San Francisco — can you work on-site there?
Question 2
What's your work authorization status, and how soon could you start? Sponsorship is available.

Candidate scorecard

· 10 criteria
Has designed and operated a production ontology or knowledge model (Palantir Foundry/Gotham or comparable)
Strong graph-DB command (TypeDB/TypeQL, Neo4j, or RDF/SPARQL) plus data modeling
Production Python backend with FastAPI or equivalent
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